Upload files to "wyniki/redukcja wymiarowosci/eksperyment 2"
This commit is contained in:
parent
245d61eb44
commit
5e6dd04388
|
|
@ -0,0 +1,398 @@
|
|||
{
|
||||
"default": {
|
||||
"best_params": {
|
||||
"C": 1,
|
||||
"gamma": "scale",
|
||||
"kernel": "linear"
|
||||
},
|
||||
"best_score": 0.9666666666666667,
|
||||
"metrics": {
|
||||
"accuracy": 0.9806201550387597,
|
||||
"precision": 0.9832440332756899,
|
||||
"recall": 0.9806201550387597,
|
||||
"f1": 0.981231002703871,
|
||||
"roc_auc": "N/A",
|
||||
"confusion_matrix": [
|
||||
[
|
||||
19,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
42,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
3,
|
||||
0,
|
||||
106,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
1,
|
||||
37,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
32,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
17
|
||||
]
|
||||
]
|
||||
},
|
||||
"execution_time": 1.3337278366088867
|
||||
},
|
||||
"pca_8": {
|
||||
"best_params": {
|
||||
"C": 1,
|
||||
"gamma": "scale",
|
||||
"kernel": "linear"
|
||||
},
|
||||
"best_score": 0.9666666666666667,
|
||||
"metrics": {
|
||||
"accuracy": 0.9806201550387597,
|
||||
"precision": 0.9832440332756899,
|
||||
"recall": 0.9806201550387597,
|
||||
"f1": 0.981231002703871,
|
||||
"roc_auc": "N/A",
|
||||
"confusion_matrix": [
|
||||
[
|
||||
19,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
42,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
3,
|
||||
0,
|
||||
106,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
1,
|
||||
37,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
32,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
17
|
||||
]
|
||||
]
|
||||
},
|
||||
"execution_time": 1.3231465816497803
|
||||
},
|
||||
"pca_10": {
|
||||
"best_params": {
|
||||
"C": 10,
|
||||
"gamma": 0.01,
|
||||
"kernel": "rbf"
|
||||
},
|
||||
"best_score": 0.9666666666666667,
|
||||
"metrics": {
|
||||
"accuracy": 0.9651162790697675,
|
||||
"precision": 0.9670330686668486,
|
||||
"recall": 0.9651162790697675,
|
||||
"f1": 0.965438609189589,
|
||||
"roc_auc": "N/A",
|
||||
"confusion_matrix": [
|
||||
[
|
||||
17,
|
||||
1,
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
42,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
3,
|
||||
105,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
37,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
1,
|
||||
0,
|
||||
32,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
16
|
||||
]
|
||||
]
|
||||
},
|
||||
"execution_time": 1.3148159980773926
|
||||
},
|
||||
"pca_12": {
|
||||
"best_params": {
|
||||
"C": 0.1,
|
||||
"gamma": "scale",
|
||||
"kernel": "linear"
|
||||
},
|
||||
"best_score": 0.9866666666666667,
|
||||
"metrics": {
|
||||
"accuracy": 0.9806201550387597,
|
||||
"precision": 0.9812916892013701,
|
||||
"recall": 0.9806201550387597,
|
||||
"f1": 0.9808357594677705,
|
||||
"roc_auc": "N/A",
|
||||
"confusion_matrix": [
|
||||
[
|
||||
17,
|
||||
1,
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
42,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
108,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
37,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
32,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
17
|
||||
]
|
||||
]
|
||||
},
|
||||
"execution_time": 1.3647890090942383
|
||||
},
|
||||
"pca_14": {
|
||||
"best_params": {
|
||||
"C": 0.1,
|
||||
"gamma": "scale",
|
||||
"kernel": "linear"
|
||||
},
|
||||
"best_score": 0.9866666666666667,
|
||||
"metrics": {
|
||||
"accuracy": 0.9883720930232558,
|
||||
"precision": 0.9887596899224806,
|
||||
"recall": 0.9883720930232558,
|
||||
"f1": 0.9884913536076327,
|
||||
"roc_auc": "N/A",
|
||||
"confusion_matrix": [
|
||||
[
|
||||
18,
|
||||
0,
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
42,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
108,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
38,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
32,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
17
|
||||
]
|
||||
]
|
||||
},
|
||||
"execution_time": 1.4236500263214111
|
||||
},
|
||||
"pca_16": {
|
||||
"best_params": {
|
||||
"C": 0.1,
|
||||
"gamma": "scale",
|
||||
"kernel": "linear"
|
||||
},
|
||||
"best_score": 0.9933333333333333,
|
||||
"metrics": {
|
||||
"accuracy": 0.9883720930232558,
|
||||
"precision": 0.9882272335760708,
|
||||
"recall": 0.9883720930232558,
|
||||
"f1": 0.9882415068780154,
|
||||
"roc_auc": "N/A",
|
||||
"confusion_matrix": [
|
||||
[
|
||||
17,
|
||||
0,
|
||||
2,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
42,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
1,
|
||||
0,
|
||||
108,
|
||||
0,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
38,
|
||||
0,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
33,
|
||||
0
|
||||
],
|
||||
[
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
17
|
||||
]
|
||||
]
|
||||
},
|
||||
"execution_time": 1.4787087440490723
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,67 @@
|
|||
[
|
||||
{
|
||||
"method": "PCA",
|
||||
"parameters": {
|
||||
"n_components": 8
|
||||
},
|
||||
"dimensions": [
|
||||
858,
|
||||
8
|
||||
],
|
||||
"explained_variance": 0.025254872783430832,
|
||||
"execution_time": 0.09234309196472168,
|
||||
"version_name": "pca_8"
|
||||
},
|
||||
{
|
||||
"method": "PCA",
|
||||
"parameters": {
|
||||
"n_components": 10
|
||||
},
|
||||
"dimensions": [
|
||||
858,
|
||||
10
|
||||
],
|
||||
"explained_variance": 0.030094454688323984,
|
||||
"execution_time": 0.09494376182556152,
|
||||
"version_name": "pca_10"
|
||||
},
|
||||
{
|
||||
"method": "PCA",
|
||||
"parameters": {
|
||||
"n_components": 12
|
||||
},
|
||||
"dimensions": [
|
||||
858,
|
||||
12
|
||||
],
|
||||
"explained_variance": 0.03480120948808253,
|
||||
"execution_time": 0.25255274772644043,
|
||||
"version_name": "pca_12"
|
||||
},
|
||||
{
|
||||
"method": "PCA",
|
||||
"parameters": {
|
||||
"n_components": 14
|
||||
},
|
||||
"dimensions": [
|
||||
858,
|
||||
14
|
||||
],
|
||||
"explained_variance": 0.03936441541322985,
|
||||
"execution_time": 0.358335018157959,
|
||||
"version_name": "pca_14"
|
||||
},
|
||||
{
|
||||
"method": "PCA",
|
||||
"parameters": {
|
||||
"n_components": 16
|
||||
},
|
||||
"dimensions": [
|
||||
858,
|
||||
16
|
||||
],
|
||||
"explained_variance": 0.04380295297367282,
|
||||
"execution_time": 0.309100866317749,
|
||||
"version_name": "pca_16"
|
||||
}
|
||||
]
|
||||
|
|
@ -0,0 +1 @@
|
|||
{"quantum_results": [["ZZ1", 0.1, 0.4183333333333333], ["ZZ1", 1.0, 0.6116666666666667], ["ZZ1", 10.0, 0.6316666666666667], ["ZZ2", 0.1, 0.4183333333333333], ["ZZ2", 1.0, 0.5466666666666667], ["ZZ2", 10.0, 0.5816666666666667], ["Pauli1", 0.1, 0.4183333333333333], ["Pauli1", 1.0, 0.61], ["Pauli1", 10.0, 0.6350000000000001], ["Pauli2", 0.1, 0.4183333333333333], ["Pauli2", 1.0, 0.545], ["Pauli2", 10.0, 0.5716666666666667], ["Amplitude_l2", 0.1, 0.7433333333333333], ["Amplitude_l2", 1.0, 0.8783333333333334], ["Amplitude_l2", 10.0, 0.8799999999999999], ["Amplitude_l1", 0.1, 0.4183333333333334], ["Amplitude_l1", 1.0, 0.455], ["Amplitude_l1", 10.0, 0.8533333333333332], ["Amplitude_min-max", 0.1, 0.8666666666666667], ["Amplitude_min-max", 1.0, 0.9366666666666666], ["Amplitude_min-max", 10.0, 0.945]], "quantum_times": {"ZZ1_0.1": {"total_time": 6260.226001739502, "cv_time": 6260.19326710701}, "ZZ1_1.0": {"total_time": 6256.16131734848, "cv_time": 6256.1335599422455}, "ZZ1_10.0": {"total_time": 6259.931497335434, "cv_time": 6259.903546571732}, "ZZ2_0.1": {"total_time": 10613.470906496048, "cv_time": 10613.420802116394}, "ZZ2_1.0": {"total_time": 10613.65952372551, "cv_time": 10613.607676267624}, "ZZ2_10.0": {"total_time": 10607.323152780533, "cv_time": 10607.27257490158}, "Pauli1_0.1": {"total_time": 6271.533178567886, "cv_time": 6271.502968549728}, "Pauli1_1.0": {"total_time": 6273.74914431572, "cv_time": 6273.720857858658}, "Pauli1_10.0": {"total_time": 6273.045310020447, "cv_time": 6273.01743388176}, "Pauli2_0.1": {"total_time": 10614.062769889832, "cv_time": 10614.011503219604}, "Pauli2_1.0": {"total_time": 10918.565894126892, "cv_time": 10918.512830018997}, "Pauli2_10.0": {"total_time": 10893.866852283478, "cv_time": 10893.815064430237}, "Amplitude_l2_0.1": {"total_time": 4.1946022510528564, "cv_time": 4.193653345108032}, "Amplitude_l2_1.0": {"total_time": 4.194614410400391, "cv_time": 4.194524765014648}, "Amplitude_l2_10.0": {"total_time": 4.179539203643799, "cv_time": 4.179457664489746}, "Amplitude_l1_0.1": {"total_time": 4.186202764511108, "cv_time": 4.186086177825928}, "Amplitude_l1_1.0": {"total_time": 4.19058632850647, "cv_time": 4.190476417541504}, "Amplitude_l1_10.0": {"total_time": 4.219393491744995, "cv_time": 4.2193028926849365}, "Amplitude_min-max_0.1": {"total_time": 4.28967547416687, "cv_time": 4.289575815200806}, "Amplitude_min-max_1.0": {"total_time": 4.295146942138672, "cv_time": 4.295051336288452}, "Amplitude_min-max_10.0": {"total_time": 4.297503471374512, "cv_time": 4.297378778457642}}, "completed_feature_maps": [], "hybrid_scores": {}, "hybrid_eval_times": {}}
|
||||
|
|
@ -0,0 +1,823 @@
|
|||
======= ROZPOCZĘCIE EKSPERYMENTU DLA PLIKU: dane/TCGA_GBM_LGG_Mutations_all.csv =======
|
||||
Wyniki będą zapisane w: wyniki/dim_reduction/19082025-2/wyniki_svm_TCGA_GBM_LGG_Mutations_all_20250819_105108.txt
|
||||
======= INFORMACJE O ŚRODOWISKU =======
|
||||
Data i czas rozpoczęcia: 2025-08-19 10:51:08
|
||||
Wersja NumPy: 1.24.3
|
||||
Wersja Pandas: 2.0.3
|
||||
Wersja scikit-learn: 1.3.0
|
||||
Wersja Qiskit: 0.25.1
|
||||
Wersja qiskit-machine-learning: 0.6.0
|
||||
Wersja dimod: 0.12.20
|
||||
Wersja neal: 0.6.0
|
||||
|
||||
======= WYBRANE EKSPERYMENTY =======
|
||||
Klasyczny SVM: TAK
|
||||
Kwantowy SVM: TAK
|
||||
Podejście hybrydowe: TAK
|
||||
|
||||
======= AKTYWOWANE MAPY CECH =======
|
||||
ZZ1: TAK
|
||||
ZZ2: TAK
|
||||
Pauli1: TAK
|
||||
Pauli2: TAK
|
||||
Z1: NIE
|
||||
Z2: NIE
|
||||
ZZ1_new: NIE
|
||||
ZZ2_new: NIE
|
||||
Amplitude_l2: TAK
|
||||
Amplitude_l1: TAK
|
||||
Amplitude_min-max: TAK
|
||||
|
||||
======= PRZYGOTOWANIE DANYCH =======
|
||||
Wymiary oryginalnych danych: (858, 27)
|
||||
Unikalne wartości zmiennej docelowej: ['Oligodendroglioma, NOS' 'Mixed glioma' 'Astrocytoma, NOS'
|
||||
'Astrocytoma, anaplastic' 'Oligodendroglioma, anaplastic' 'Glioblastoma']
|
||||
Rozkład klas: {'Glioblastoma': 360, 'Astrocytoma, anaplastic': 129, 'Mixed glioma': 128, 'Oligodendroglioma, NOS': 108, 'Oligodendroglioma, anaplastic': 75, 'Astrocytoma, NOS': 58}
|
||||
Wymiary danych po usunięciu kolumn identyfikacyjnych: (858, 24)
|
||||
Przekształcanie kolumn kategorycznych na binarne...
|
||||
Kolumny kategoryczne do przekształcenia: ['Gender', 'Age_at_diagnosis', 'Primary_Diagnosis', 'Race', 'IDH1', 'TP53', 'ATRX', 'PTEN', 'EGFR', 'CIC', 'MUC16', 'PIK3CA', 'NF1', 'PIK3R1', 'FUBP1', 'RB1', 'NOTCH1', 'BCOR', 'CSMD3', 'SMARCA4', 'GRIN2A', 'IDH2', 'FAT4', 'PDGFRA']
|
||||
Kolumna Gender zawiera wartości: ['Male' 'Female']
|
||||
Kolumna Age_at_diagnosis zawiera wartości: ['51 years 108 days' '38 years 261 days' '35 years 62 days'
|
||||
'32 years 283 days' '31 years 187 days' '33 years 78 days'
|
||||
'35 years 68 days' '44 years 239 days' '33 years 350 days' '87 years'
|
||||
'51 years 328 days' '54 years 95 days' '52 years 214 days'
|
||||
'47 years 123 days' '34 years 132 days' '40 years 192 days'
|
||||
'53 years 352 days' '41 years 70 days' '43 years 161 days'
|
||||
'37 years 159 days' '47 years 173 days' '31 years 8 days'
|
||||
'25 years 191 days' '66 years 305 days' '56 years 250 days'
|
||||
'35 years 362 days' '51 years 363 days' '37 years 32 days'
|
||||
'54 years 183 days' '32 years 76 days' '65 years 28 days'
|
||||
'43 years 131 days' '51 years 59 days' '43 years 221 days'
|
||||
'25 years 214 days' '45 years 24 days' '50 years 153 days'
|
||||
'27 years 166 days' '53 years 252 days' '46 years 144 days'
|
||||
'24 years 239 days' '34 years 70 days' '29 years 198 days'
|
||||
'45 years 124 days' '62 years 90 days' '46 years 224 days'
|
||||
'36 years 247 days' '62 years 202 days' '70 years 159 days'
|
||||
'53 years 41 days' '48 years 124 days' '40 years 69 days'
|
||||
'40 years 7 days' '20 years 359 days' '57 years 200 days'
|
||||
'38 years 322 days' '52 years 192 days' '56 years 104 days'
|
||||
'59 years 275 days' '67 years 107 days' '48 years 346 days'
|
||||
'59 years 254 days' '58 years 147 days' '27 years 247 days'
|
||||
'51 years 230 days' '74 years 11 days' '52 years 230 days'
|
||||
'61 years 62 days' '66 years 146 days' '42 years 32 days'
|
||||
'31 years 344 days' '48 years 268 days' '33 years 340 days'
|
||||
'34 years 213 days' '24 years 54 days' '55 years 48 days'
|
||||
'27 years 323 days' '29 years 32 days' '39 years 131 days'
|
||||
'70 years 3 days' '30 years 338 days' '39 years 178 days'
|
||||
'25 years 41 days' '48 years 160 days' '57 years 17 days'
|
||||
'34 years 307 days' '58 years 137 days' '55 years 208 days'
|
||||
'60 years 49 days' '38 years 13 days' '56 years 113 days'
|
||||
'54 years 180 days' '31 years 152 days' '54 years 146 days'
|
||||
'52 years 241 days' '33 years 54 days' '42 years 173 days'
|
||||
'20 years 75 days' '64 years 106 days' '29 years 232 days'
|
||||
'36 years 222 days' '31 years 362 days' '36 years 67 days'
|
||||
'32 years 173 days' '38 years 292 days' '29 years 298 days'
|
||||
'41 years 76 days' '35 years 189 days' '33 years 39 days'
|
||||
'32 years 50 days' '49 years 276 days' '69 years 217 days'
|
||||
'14 years 154 days' '33 years 349 days' '47 years 92 days'
|
||||
'33 years 58 days' '63 years 364 days' '62 years 205 days'
|
||||
'37 years 83 days' '53 years 183 days' '53 years 74 days'
|
||||
'45 years 76 days' '33 years 331 days' '53 years 359 days'
|
||||
'52 years 156 days' '64 years 304 days' '71 years 70 days'
|
||||
'40 years 300 days' '36 years 354 days' '25 years 249 days'
|
||||
'63 years 170 days' '40 years 310 days' '47 years 215 days'
|
||||
'73 years 241 days' '24 years 51 days' '48 years 342 days'
|
||||
'41 years 325 days' '36 years 189 days' '45 years 334 days'
|
||||
'44 years 204 days' '27 years 6 days' '50 years 181 days'
|
||||
'42 years 141 days' '40 years 248 days' '62 years 192 days'
|
||||
'33 years 195 days' '46 years 42 days' '41 years 117 days'
|
||||
'47 years 333 days' '56 years 159 days' '38 years 64 days'
|
||||
'60 years 64 days' '29 years 150 days' '59 years 196 days'
|
||||
'44 years 66 days' '69 years 60 days' '63 years 253 days'
|
||||
'43 years 142 days' '61 years 316 days' '39 years 66 days'
|
||||
'31 years 315 days' '51 years 164 days' '41 years 203 days'
|
||||
'60 years 360 days' '74 years 158 days' '63 years 81 days'
|
||||
'66 years 170 days' '51 years 312 days' '39 years 62 days'
|
||||
'38 years 111 days' '37 years 92 days' '30 years 32 days'
|
||||
'54 years 143 days' '36 years 357 days' '48 years 197 days'
|
||||
'29 years 81 days' '32 years 135 days' '44 years 35 days'
|
||||
'30 years 329 days' '57 years 287 days' '19 years 55 days'
|
||||
'70 years 242 days' '63 years 67 days' '41 years 255 days'
|
||||
'29 years 291 days' '42 years 318 days' '51 years 172 days'
|
||||
'38 years 25 days' '28 years 344 days' '32 years 166 days'
|
||||
'26 years 43 days' '67 years 329 days' '40 years 326 days'
|
||||
'59 years 295 days' '58 years 16 days' '56 years 171 days'
|
||||
'20 years 276 days' '49 years 296 days' '37 years 31 days'
|
||||
'48 years 243 days' '71 years 227 days' '43 years 316 days'
|
||||
'27 years 309 days' '25 years 78 days' '30 years 126 days'
|
||||
'47 years 335 days' '31 years 262 days' '30 years 295 days'
|
||||
'30 years 276 days' '24 years 146 days' '41 years 66 days'
|
||||
'34 years 189 days' '56 years 155 days' '39 years 348 days'
|
||||
'23 years 3 days' '31 years 273 days' '17 years 271 days'
|
||||
'64 years 110 days' '27 years 221 days' '69 years 64 days'
|
||||
'37 years 51 days' '44 years 92 days' '25 years 97 days'
|
||||
'29 years 235 days' '26 years 209 days' '47 years 294 days'
|
||||
'39 years 252 days' '35 years 26 days' '33 years 287 days'
|
||||
'74 years 204 days' '50 years 167 days' '65 years 314 days'
|
||||
'60 years 116 days' '34 years 346 days' '44 years 229 days'
|
||||
'21 years 243 days' '55 years 87 days' '43 years 361 days'
|
||||
'36 years 49 days' '70 years 100 days' '23 years 352 days'
|
||||
'43 years 195 days' '30 years 264 days' '38 years 140 days'
|
||||
'34 years 188 days' '55 years 92 days' '30 years 238 days'
|
||||
'61 years 68 days' '44 years 344 days' '35 years 238 days'
|
||||
'68 years 129 days' '44 years 206 days' '38 years 89 days'
|
||||
'36 years 304 days' '52 years 32 days' '36 years 183 days'
|
||||
'33 years 176 days' '60 years 119 days' '44 years 90 days'
|
||||
'58 years 157 days' '33 years 364 days' '62 years 235 days'
|
||||
'44 years 226 days' '36 years 311 days' '29 years 132 days'
|
||||
'25 years 282 days' '20 years 307 days' '61 years 305 days'
|
||||
'41 years 222 days' '47 years 224 days' '59 years 212 days'
|
||||
'48 years 311 days' '38 years 24 days' '27 years 58 days'
|
||||
'58 years 15 days' '26 years 118 days' '44 years 209 days'
|
||||
'32 years 196 days' '22 years 305 days' '25 years 316 days'
|
||||
'34 years 27 days' '24 years 278 days' '30 years 348 days'
|
||||
'39 years 280 days' '22 years 236 days' '53 years 286 days'
|
||||
'30 years 355 days' '37 years 239 days' '36 years 73 days'
|
||||
'41 years 314 days' '57 years 201 days' '52 years 243 days'
|
||||
'31 years 346 days' '32 years 167 days' '44 years 131 days'
|
||||
'40 years 106 days' '44 years 263 days' '39 years 5 days'
|
||||
'62 years 93 days' '45 years 296 days' '48 years 131 days'
|
||||
'49 years 187 days' '38 years 194 days' '28 years 115 days'
|
||||
'38 years 273 days' '37 years 81 days' '41 years 179 days'
|
||||
'60 years 15 days' '50 years 232 days' '75 years 292 days'
|
||||
'43 years 143 days' '52 years 63 days' '38 years 333 days'
|
||||
'66 years 344 days' '30 years 57 days' '59 years 262 days'
|
||||
'35 years 37 days' '38 years 203 days' '42 years 310 days'
|
||||
'59 years 166 days' '26 years 94 days' '58 years 266 days'
|
||||
'31 years 10 days' '30 years 161 days' '45 years 231 days'
|
||||
'37 years 166 days' '34 years 162 days' '34 years 339 days'
|
||||
'32 years 53 days' '66 years 176 days' '46 years 89 days'
|
||||
'38 years 326 days' '33 years 213 days' '40 years 61 days'
|
||||
'52 years 145 days' '59 years 359 days' '58 years 55 days'
|
||||
'43 years 281 days' '33 years 192 days' '55 years 40 days'
|
||||
'43 years 226 days' '60 years 123 days' '33 years 332 days'
|
||||
'48 years 80 days' '70 years 205 days' '53 years 197 days'
|
||||
'66 years 136 days' '36 years 275 days' '40 years 49 days'
|
||||
'73 years 103 days' '36 years 165 days' '74 years 56 days'
|
||||
'43 years 145 days' '40 years 323 days' '38 years 128 days'
|
||||
'54 years 291 days' '63 years 54 days' '62 years 303 days'
|
||||
'35 years 53 days' '39 years 174 days' '29 years 341 days'
|
||||
'46 years 333 days' '46 years 110 days' '51 years 329 days'
|
||||
'54 years 221 days' '42 years 91 days' '64 years 108 days'
|
||||
'29 years 220 days' '65 years 195 days' '41 years 91 days'
|
||||
'31 years 206 days' '58 years 5 days' '54 years 318 days'
|
||||
'28 years 26 days' '20 years 116 days' '34 years 160 days'
|
||||
'54 years 198 days' '45 years 259 days' '48 years 325 days'
|
||||
'29 years 86 days' '22 years 8 days' '32 years 161 days'
|
||||
'40 years 50 days' '61 years 47 days' '57 years 276 days'
|
||||
'54 years 100 days' '56 years 317 days' '34 years 139 days'
|
||||
'27 years 289 days' '37 years 149 days' '43 years 332 days'
|
||||
'41 years 10 days' '33 years 104 days' '39 years 35 days'
|
||||
'31 years 300 days' '67 years 219 days' '30 years 140 days'
|
||||
'48 years 212 days' '50 years 302 days' '45 years 34 days'
|
||||
'47 years 299 days' '32 years 158 days' '26 years 171 days'
|
||||
'29 years 213 days' '28 years 79 days' '66 years 16 days'
|
||||
'39 years 304 days' '33 years 238 days' '60 years 75 days'
|
||||
'35 years 65 days' '35 years 45 days' '58 years 168 days'
|
||||
'26 years 50 days' '30 years 113 days' '38 years 82 days'
|
||||
'35 years 325 days' '39 years 291 days' '55 years 306 days'
|
||||
'49 years 337 days' '50 years 59 days' '52 years 163 days'
|
||||
'51 years 121 days' '61 years 285 days' '52 years 149 days'
|
||||
'35 years 66 days' '47 years 266 days' '35 years 70 days'
|
||||
'31 years 105 days' '--' '31 years 35 days' '37 years 50 days'
|
||||
'37 years 97 days' '42 years 249 days' '32 years 116 days'
|
||||
'61 years 22 days' '48 years 78 days' '34 years 42 days'
|
||||
'30 years 252 days' '30 years 86 days' '28 years 195 days'
|
||||
'47 years 226 days' '35 years 91 days' '23 years 171 days'
|
||||
'49 years 264 days' '36 years 78 days' '54 years 268 days'
|
||||
'22 years 300 days' '42 years 5 days' '28 years 213 days'
|
||||
'25 years 232 days' '66 years 3 days' '46 years 181 days'
|
||||
'57 years 310 days' '43 years 22 days' '49 years 309 days'
|
||||
'33 years 99 days' '27 years 306 days' '62 years 166 days'
|
||||
'55 years 153 days' '37 years 285 days' '37 years 107 days'
|
||||
'32 years 122 days' '38 years 143 days' '42 years 289 days'
|
||||
'47 years 165 days' '54 years 227 days' '29 years 49 days'
|
||||
'39 years 359 days' '28 years 249 days' '23 years 108 days'
|
||||
'21 years 276 days' '38 years 229 days' '49 years 302 days'
|
||||
'38 years 308 days' '22 years 205 days' '67 years 215 days'
|
||||
'73 years 329 days' '62 years 100 days' '57 years 314 days'
|
||||
'30 years 334 days' '24 years 181 days' '20 years 84 days'
|
||||
'41 years 116 days' '53 years 258 days' '34 years 237 days'
|
||||
'51 years 350 days' '57 years 364 days' '31 years 176 days'
|
||||
'57 years 141 days' '49 years 263 days' '60 years 106 days'
|
||||
'73 years 250 days' '64 years 298 days' '73 years 164 days'
|
||||
'33 years 239 days' '67 years 151 days' '72 years 74 days'
|
||||
'69 years 124 days' '79 years 39 days' '68 years 7 days'
|
||||
'76 years 5 days' '82 years 14 days' '58 years 9 days'
|
||||
'52 years 251 days' '81 years 217 days' '74 years 172 days'
|
||||
'76 years 87 days' '57 years 110 days' '67 years 121 days'
|
||||
'63 years 313 days' '64 years 143 days' '69 years 50 days'
|
||||
'66 years 28 days' '54 years 347 days' '60 years 114 days'
|
||||
'45 years 230 days' '36 years 219 days' '49 years 174 days'
|
||||
'69 years 219 days' '54 years 340 days' '58 years 327 days'
|
||||
'61 years 183 days' '64 years 191 days' '65 years 309 days'
|
||||
'60 years 298 days' '53 years 309 days' '39 years 193 days'
|
||||
'58 years 227 days' '56 years 172 days' '65 years 344 days'
|
||||
'36 years 59 days' '72 years 192 days' '48 years 348 days'
|
||||
'39 years 157 days' '54 years 176 days' '63 years 333 days'
|
||||
'66 years 159 days' '52 years 97 days' '89 years 105 days'
|
||||
'54 years 242 days' '60 years 262 days' '77 years 116 days'
|
||||
'60 years 264 days' '80 years 61 days' '51 years 264 days'
|
||||
'53 years 145 days' '43 years 313 days' '74 years 144 days'
|
||||
'76 years 118 days' '49 years 228 days' '48 years 333 days'
|
||||
'68 years 334 days' '74 years 359 days' '69 years 211 days'
|
||||
'64 years 192 days' '58 years 144 days' '47 years 88 days'
|
||||
'61 years 282 days' '75 years 194 days' '52 years 246 days'
|
||||
'47 years 199 days' '21 years 288 days' '72 years 169 days'
|
||||
'68 years 108 days' '67 years' '52 years 238 days' '59 years 11 days'
|
||||
'59 years 149 days' '48 years 362 days' '76 years 58 days'
|
||||
'72 years 193 days' '51 years 113 days' '67 years 187 days'
|
||||
'82 years 115 days' '64 years 209 days' '75 years 265 days'
|
||||
'85 years 221 days' '73 years 105 days' '78 years 273 days'
|
||||
'45 years 136 days' '42 years 225 days' '53 years 299 days'
|
||||
'68 years 290 days' '43 years 245 days' '59 years 289 days'
|
||||
'52 years 137 days' '61 years 244 days' '40 years 207 days'
|
||||
'63 years 263 days' '63 years 307 days' '70 years 98 days'
|
||||
'59 years 362 days' '56 years 101 days' '62 years 190 days'
|
||||
'24 years 83 days' '72 years 345 days' '67 years 161 days'
|
||||
'54 years 200 days' '86 years 155 days' '62 years 222 days'
|
||||
'63 years 97 days' '58 years 200 days' '60 years 5 days'
|
||||
'67 years 17 days' '23 years 310 days' '58 years 59 days'
|
||||
'64 years 18 days' '65 years 37 days' '61 years 32 days'
|
||||
'52 years 161 days' '77 years 139 days' '58 years 280 days'
|
||||
'78 years 264 days' '63 years 122 days' '63 years 86 days'
|
||||
'23 years 133 days' '65 years 94 days' '50 years 79 days'
|
||||
'55 years 209 days' '60 years 258 days' '62 years 220 days'
|
||||
'69 years 95 days' '56 years 187 days' '76 years 72 days'
|
||||
'76 years 252 days' '86 years 8 days' '69 years 80 days'
|
||||
'59 years 219 days' '75 years 337 days' '57 years 202 days'
|
||||
'69 years 257 days' '45 years 226 days' '47 years 130 days'
|
||||
'74 years 57 days' '78 years 93 days' '59 years 64 days'
|
||||
'21 years 266 days' '81 years 34 days' '70 years 60 days'
|
||||
'62 years 153 days' '75 years 191 days' '60 years 136 days'
|
||||
'63 years 53 days' '61 years 52 days' '47 years 71 days'
|
||||
'76 years 150 days' '84 years 287 days' '77 years 153 days'
|
||||
'48 years 182 days' '69 years 223 days' '56 years 12 days'
|
||||
'76 years 171 days' '70 years 117 days' '34 years 267 days'
|
||||
'68 years 341 days' '54 years 216 days' '74 years 313 days'
|
||||
'73 years 193 days' '57 years 112 days' '44 years 230 days'
|
||||
'83 years 265 days' '74 years 291 days' '51 years 275 days'
|
||||
'52 years 60 days' '73 years 102 days' '81 years 307 days'
|
||||
'78 years 94 days' '57 years 312 days' '53 years 147 days'
|
||||
'50 years 330 days' '78 years 56 days' '76 years 236 days'
|
||||
'57 years 118 days' '36 years 108 days' '72 years 284 days'
|
||||
'31 years 11 days' '65 years 66 days' '63 years 201 days'
|
||||
'49 years 351 days' '59 years 311 days' '69 years 232 days'
|
||||
'62 years 304 days' '52 years 270 days' '56 years 294 days'
|
||||
'81 years 168 days' '40 years 293 days' '81 years 319 days'
|
||||
'50 years 171 days' '38 years 8 days' '48 years 183 days'
|
||||
'51 years 86 days' '66 years 341 days' '71 years 315 days'
|
||||
'24 years 156 days' '63 years 195 days' '69 years 116 days'
|
||||
'78 years 7 days' '30 years 155 days' '52 years 288 days'
|
||||
'65 years 57 days' '78 years 271 days' '61 years 37 days'
|
||||
'50 years 173 days' '39 years 57 days' '66 years 81 days'
|
||||
'49 years 6 days' '54 years 78 days' '58 years 48 days' '73 years 4 days'
|
||||
'53 years 303 days' '63 years 292 days' '66 years 191 days'
|
||||
'49 years 322 days' '59 years 335 days' '54 years 327 days'
|
||||
'57 years 274 days' '59 years 157 days' '44 years 55 days'
|
||||
'58 years 14 days' '65 years 18 days' '67 years 34 days'
|
||||
'75 years 172 days' '88 years 209 days' '53 years 85 days'
|
||||
'75 years 126 days' '66 years 269 days' '51 years 51 days'
|
||||
'40 years 360 days' '58 years 6 days' '57 years 29 days'
|
||||
'55 years 144 days' '40 years 268 days' '40 years 206 days'
|
||||
'54 years 89 days' '53 years 136 days' '56 years 9 days'
|
||||
'59 years 306 days' '75 years 118 days' '59 years 10 days'
|
||||
'44 years 135 days' '46 years 236 days' '68 years 248 days'
|
||||
'30 years 340 days' '36 years 302 days' '78 years 270 days'
|
||||
'83 years 235 days' '51 years 201 days' '63 years 118 days'
|
||||
'59 years 227 days' '53 years 233 days' '74 years 83 days'
|
||||
'60 years 246 days' '54 years 295 days' '63 years 9 days'
|
||||
'58 years 308 days' '60 years 274 days' '71 years 257 days'
|
||||
'75 years 78 days' '50 years 309 days' '67 years 6 days'
|
||||
'60 years 358 days' '65 years 143 days' '51 years 90 days'
|
||||
'45 years 301 days' '39 years 316 days' '70 years 245 days'
|
||||
'73 years 133 days' '65 years 360 days' '72 years 251 days'
|
||||
'61 years 177 days' '65 years 22 days' '30 years 327 days'
|
||||
'64 years 50 days' '55 years 267 days' '79 years 123 days'
|
||||
'74 years 294 days' '63 years 24 days' '81 years 21 days'
|
||||
'53 years 86 days' '69 years 343 days' '60 years 342 days'
|
||||
'55 years 214 days' '75 years 342 days' '47 years 349 days'
|
||||
'71 years 148 days' '25 years 82 days' '61 years 247 days'
|
||||
'47 years 302 days' '50 years 129 days' '72 years 97 days'
|
||||
'31 years 7 days' '86 years 216 days' '38 years 214 days'
|
||||
'72 years 302 days' '55 years 46 days' '66 years 320 days'
|
||||
'55 years 361 days' '72 years 57 days' '33 years 7 days'
|
||||
'83 years 114 days' '43 years 259 days' '68 years 224 days'
|
||||
'79 years 183 days' '67 years 326 days' '49 years 298 days'
|
||||
'66 years 256 days' '68 years 221 days' '47 years 52 days'
|
||||
'61 years 218 days' '49 years 157 days' '67 years 120 days'
|
||||
'32 years 268 days' '65 years 41 days' '66 years 213 days'
|
||||
'62 years 281 days' '50 years 16 days' '34 years 111 days'
|
||||
'61 years 11 days' '77 years 353 days' '54 years 101 days'
|
||||
'51 years 32 days' '53 years 8 days' '78 years 253 days'
|
||||
'46 years 337 days' '52 years 244 days' '48 years 249 days'
|
||||
'51 years 205 days' '62 years 41 days' '58 years 20 days'
|
||||
'61 years 112 days' '66 years 111 days' '64 years 43 days'
|
||||
'56 years 114 days' '77 years 325 days' '85 years 65 days'
|
||||
'77 years 178 days' '63 years 121 days' '76 years 221 days']
|
||||
Kolumna Age_at_diagnosis zostanie zakodowana jako one-hot.
|
||||
Kolumna Primary_Diagnosis zawiera wartości: ['Oligodendroglioma, NOS' 'Mixed glioma' 'Astrocytoma, NOS'
|
||||
'Astrocytoma, anaplastic' 'Oligodendroglioma, anaplastic' 'Glioblastoma']
|
||||
Kolumna Primary_Diagnosis zostanie zakodowana jako one-hot.
|
||||
Kolumna Race zawiera wartości: ['white' 'asian' 'black or african american' 'not reported'
|
||||
'american indian or alaska native']
|
||||
Kolumna Race zostanie zakodowana jako one-hot.
|
||||
Kolumna IDH1 zawiera wartości: ['MUTATED' 'NOT_MUTATED']
|
||||
Kolumna TP53 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna ATRX zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna PTEN zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna EGFR zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna CIC zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna MUC16 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna PIK3CA zawiera wartości: ['MUTATED' 'NOT_MUTATED']
|
||||
Kolumna NF1 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna PIK3R1 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna FUBP1 zawiera wartości: ['MUTATED' 'NOT_MUTATED']
|
||||
Kolumna RB1 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna NOTCH1 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna BCOR zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna CSMD3 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna SMARCA4 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna GRIN2A zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna IDH2 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna FAT4 zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Kolumna PDGFRA zawiera wartości: ['NOT_MUTATED' 'MUTATED']
|
||||
Wymiary danych po przekształceniu: (858, 867)
|
||||
Wymiary danych wejściowych: (858, 867)
|
||||
Wymiary danych po skalowaniu: (858, 867)
|
||||
|
||||
======= REDUKCJA WYMIAROWOŚCI =======
|
||||
|
||||
Testowanie PCA z 8 komponentami...
|
||||
Wymiary danych po redukcji PCA: (858, 8)
|
||||
Wyjaśniona wariancja: 0.0253
|
||||
Czas wykonania PCA: 0.09 sekund
|
||||
|
||||
Testowanie PCA z 10 komponentami...
|
||||
Wymiary danych po redukcji PCA: (858, 10)
|
||||
Wyjaśniona wariancja: 0.0301
|
||||
Czas wykonania PCA: 0.09 sekund
|
||||
|
||||
Testowanie PCA z 12 komponentami...
|
||||
Wymiary danych po redukcji PCA: (858, 12)
|
||||
Wyjaśniona wariancja: 0.0348
|
||||
Czas wykonania PCA: 0.25 sekund
|
||||
|
||||
Testowanie PCA z 14 komponentami...
|
||||
Wymiary danych po redukcji PCA: (858, 14)
|
||||
Wyjaśniona wariancja: 0.0394
|
||||
Czas wykonania PCA: 0.36 sekund
|
||||
|
||||
Testowanie PCA z 16 komponentami...
|
||||
Wymiary danych po redukcji PCA: (858, 16)
|
||||
Wyjaśniona wariancja: 0.0438
|
||||
Czas wykonania PCA: 0.31 sekund
|
||||
|
||||
Wyniki redukcji wymiarowości zapisane do: wyniki/dim_reduction/19082025-2/dimension_reduction_results_TCGA_GBM_LGG_Mutations_all.json
|
||||
|
||||
Wybrano najlepszą wersję redukcji wymiarowości: pca_8
|
||||
Wymiary domyślnego zbioru treningowego: (600, 8)
|
||||
Wymiary domyślnego zbioru testowego: (258, 8)
|
||||
|
||||
Dostępne wersje zredukowanych danych:
|
||||
pca_8: Train (600, 8), Test (258, 8)
|
||||
pca_10: Train (600, 10), Test (258, 10)
|
||||
pca_12: Train (600, 12), Test (258, 12)
|
||||
pca_14: Train (600, 14), Test (258, 14)
|
||||
pca_16: Train (600, 16), Test (258, 16)
|
||||
|
||||
Czas przygotowania danych: 1.36 sekund
|
||||
|
||||
======= KLASYCZNY SVM (BASELINE) =======
|
||||
|
||||
Testowanie klasycznego SVM na wersji danych: default
|
||||
Wymiary danych: X_train (600, 8), X_test (258, 8)
|
||||
Rozpoczęcie GridSearchCV dla default...
|
||||
Najlepsze parametry klasycznego SVM (default): {'C': 1, 'gamma': 'scale', 'kernel': 'linear'}
|
||||
Dokładność klasycznego SVM (default): 0.9667
|
||||
Raport klasyfikacji (klasyczny SVM - default):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.83 1.00 0.90 19
|
||||
Astrocytoma, anaplastic 1.00 1.00 1.00 42
|
||||
Glioblastoma 0.99 0.97 0.98 109
|
||||
Mixed glioma 1.00 0.97 0.99 38
|
||||
Oligodendroglioma, NOS 1.00 0.97 0.98 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.98 258
|
||||
macro avg 0.97 0.99 0.98 258
|
||||
weighted avg 0.98 0.98 0.98 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Klasyczny SVM (default):
|
||||
Accuracy: 0.9806
|
||||
Precision: 0.9832
|
||||
Recall: 0.9806
|
||||
F1 Score: 0.9812
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 19 0 0 0 0 0]
|
||||
[ 0 42 0 0 0 0]
|
||||
[ 3 0 106 0 0 0]
|
||||
[ 0 0 1 37 0 0]
|
||||
[ 1 0 0 0 32 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
Czas trenowania i ewaluacji klasycznego SVM (default): 1.33 sekund
|
||||
|
||||
Testowanie klasycznego SVM na wersji danych: pca_8
|
||||
Wymiary danych: X_train (600, 8), X_test (258, 8)
|
||||
Rozpoczęcie GridSearchCV dla pca_8...
|
||||
Najlepsze parametry klasycznego SVM (pca_8): {'C': 1, 'gamma': 'scale', 'kernel': 'linear'}
|
||||
Dokładność klasycznego SVM (pca_8): 0.9667
|
||||
Raport klasyfikacji (klasyczny SVM - pca_8):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.83 1.00 0.90 19
|
||||
Astrocytoma, anaplastic 1.00 1.00 1.00 42
|
||||
Glioblastoma 0.99 0.97 0.98 109
|
||||
Mixed glioma 1.00 0.97 0.99 38
|
||||
Oligodendroglioma, NOS 1.00 0.97 0.98 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.98 258
|
||||
macro avg 0.97 0.99 0.98 258
|
||||
weighted avg 0.98 0.98 0.98 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Klasyczny SVM (pca_8):
|
||||
Accuracy: 0.9806
|
||||
Precision: 0.9832
|
||||
Recall: 0.9806
|
||||
F1 Score: 0.9812
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 19 0 0 0 0 0]
|
||||
[ 0 42 0 0 0 0]
|
||||
[ 3 0 106 0 0 0]
|
||||
[ 0 0 1 37 0 0]
|
||||
[ 1 0 0 0 32 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
Czas trenowania i ewaluacji klasycznego SVM (pca_8): 1.32 sekund
|
||||
|
||||
Testowanie klasycznego SVM na wersji danych: pca_10
|
||||
Wymiary danych: X_train (600, 10), X_test (258, 10)
|
||||
Rozpoczęcie GridSearchCV dla pca_10...
|
||||
Najlepsze parametry klasycznego SVM (pca_10): {'C': 10, 'gamma': 0.01, 'kernel': 'rbf'}
|
||||
Dokładność klasycznego SVM (pca_10): 0.9667
|
||||
Raport klasyfikacji (klasyczny SVM - pca_10):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.89 0.89 0.89 19
|
||||
Astrocytoma, anaplastic 0.89 1.00 0.94 42
|
||||
Glioblastoma 0.98 0.96 0.97 109
|
||||
Mixed glioma 1.00 0.97 0.99 38
|
||||
Oligodendroglioma, NOS 1.00 0.97 0.98 33
|
||||
Oligodendroglioma, anaplastic 1.00 0.94 0.97 17
|
||||
|
||||
accuracy 0.97 258
|
||||
macro avg 0.96 0.96 0.96 258
|
||||
weighted avg 0.97 0.97 0.97 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Klasyczny SVM (pca_10):
|
||||
Accuracy: 0.9651
|
||||
Precision: 0.9670
|
||||
Recall: 0.9651
|
||||
F1 Score: 0.9654
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 17 1 1 0 0 0]
|
||||
[ 0 42 0 0 0 0]
|
||||
[ 1 3 105 0 0 0]
|
||||
[ 1 0 0 37 0 0]
|
||||
[ 0 0 1 0 32 0]
|
||||
[ 0 1 0 0 0 16]]
|
||||
Czas trenowania i ewaluacji klasycznego SVM (pca_10): 1.31 sekund
|
||||
|
||||
Testowanie klasycznego SVM na wersji danych: pca_12
|
||||
Wymiary danych: X_train (600, 12), X_test (258, 12)
|
||||
Rozpoczęcie GridSearchCV dla pca_12...
|
||||
Najlepsze parametry klasycznego SVM (pca_12): {'C': 0.1, 'gamma': 'scale', 'kernel': 'linear'}
|
||||
Dokładność klasycznego SVM (pca_12): 0.9867
|
||||
Raport klasyfikacji (klasyczny SVM - pca_12):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.85 0.89 0.87 19
|
||||
Astrocytoma, anaplastic 0.98 1.00 0.99 42
|
||||
Glioblastoma 0.99 0.99 0.99 109
|
||||
Mixed glioma 1.00 0.97 0.99 38
|
||||
Oligodendroglioma, NOS 1.00 0.97 0.98 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.98 258
|
||||
macro avg 0.97 0.97 0.97 258
|
||||
weighted avg 0.98 0.98 0.98 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Klasyczny SVM (pca_12):
|
||||
Accuracy: 0.9806
|
||||
Precision: 0.9813
|
||||
Recall: 0.9806
|
||||
F1 Score: 0.9808
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 17 1 1 0 0 0]
|
||||
[ 0 42 0 0 0 0]
|
||||
[ 1 0 108 0 0 0]
|
||||
[ 1 0 0 37 0 0]
|
||||
[ 1 0 0 0 32 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
Czas trenowania i ewaluacji klasycznego SVM (pca_12): 1.36 sekund
|
||||
|
||||
Testowanie klasycznego SVM na wersji danych: pca_14
|
||||
Wymiary danych: X_train (600, 14), X_test (258, 14)
|
||||
Rozpoczęcie GridSearchCV dla pca_14...
|
||||
Najlepsze parametry klasycznego SVM (pca_14): {'C': 0.1, 'gamma': 'scale', 'kernel': 'linear'}
|
||||
Dokładność klasycznego SVM (pca_14): 0.9867
|
||||
Raport klasyfikacji (klasyczny SVM - pca_14):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.90 0.95 0.92 19
|
||||
Astrocytoma, anaplastic 1.00 1.00 1.00 42
|
||||
Glioblastoma 0.99 0.99 0.99 109
|
||||
Mixed glioma 1.00 1.00 1.00 38
|
||||
Oligodendroglioma, NOS 1.00 0.97 0.98 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.99 258
|
||||
macro avg 0.98 0.98 0.98 258
|
||||
weighted avg 0.99 0.99 0.99 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Klasyczny SVM (pca_14):
|
||||
Accuracy: 0.9884
|
||||
Precision: 0.9888
|
||||
Recall: 0.9884
|
||||
F1 Score: 0.9885
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 18 0 1 0 0 0]
|
||||
[ 0 42 0 0 0 0]
|
||||
[ 1 0 108 0 0 0]
|
||||
[ 0 0 0 38 0 0]
|
||||
[ 1 0 0 0 32 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
Czas trenowania i ewaluacji klasycznego SVM (pca_14): 1.42 sekund
|
||||
|
||||
Testowanie klasycznego SVM na wersji danych: pca_16
|
||||
Wymiary danych: X_train (600, 16), X_test (258, 16)
|
||||
Rozpoczęcie GridSearchCV dla pca_16...
|
||||
Najlepsze parametry klasycznego SVM (pca_16): {'C': 0.1, 'gamma': 'scale', 'kernel': 'linear'}
|
||||
Dokładność klasycznego SVM (pca_16): 0.9933
|
||||
Raport klasyfikacji (klasyczny SVM - pca_16):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.94 0.89 0.92 19
|
||||
Astrocytoma, anaplastic 1.00 1.00 1.00 42
|
||||
Glioblastoma 0.98 0.99 0.99 109
|
||||
Mixed glioma 1.00 1.00 1.00 38
|
||||
Oligodendroglioma, NOS 1.00 1.00 1.00 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.99 258
|
||||
macro avg 0.99 0.98 0.98 258
|
||||
weighted avg 0.99 0.99 0.99 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Klasyczny SVM (pca_16):
|
||||
Accuracy: 0.9884
|
||||
Precision: 0.9882
|
||||
Recall: 0.9884
|
||||
F1 Score: 0.9882
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 17 0 2 0 0 0]
|
||||
[ 0 42 0 0 0 0]
|
||||
[ 1 0 108 0 0 0]
|
||||
[ 0 0 0 38 0 0]
|
||||
[ 0 0 0 0 33 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
Czas trenowania i ewaluacji klasycznego SVM (pca_16): 1.48 sekund
|
||||
|
||||
Wyniki klasycznego SVM zapisane do: wyniki/dim_reduction/19082025-2/classic_svm_results_TCGA_GBM_LGG_Mutations_all.json
|
||||
|
||||
======= SVM Z JĄDREM KWANTOWYM =======
|
||||
Brak wyników w cache, używanie tymczasowych wyników.
|
||||
|
||||
DEBUG - Wymiary danych treningowych: (600, 8)
|
||||
DEBUG - Mapa cech ZZ1 ma 8 kubitów
|
||||
DEBUG - Mapa cech ZZ2 ma 8 kubitów
|
||||
DEBUG - Mapa cech Pauli1 ma 8 kubitów
|
||||
DEBUG - Mapa cech Pauli2 ma 8 kubitów
|
||||
Testowanie ZZ1 z C=0.1...
|
||||
Dokładność kwantowego SVM z ZZ1, C=0.1: 0.4183 (czas: 6260.23 s)
|
||||
Testowanie ZZ1 z C=1.0...
|
||||
Dokładność kwantowego SVM z ZZ1, C=1.0: 0.6117 (czas: 6256.16 s)
|
||||
Testowanie ZZ1 z C=10.0...
|
||||
Dokładność kwantowego SVM z ZZ1, C=10.0: 0.6317 (czas: 6259.93 s)
|
||||
Testowanie ZZ2 z C=0.1...
|
||||
Dokładność kwantowego SVM z ZZ2, C=0.1: 0.4183 (czas: 10613.47 s)
|
||||
Testowanie ZZ2 z C=1.0...
|
||||
Dokładność kwantowego SVM z ZZ2, C=1.0: 0.5467 (czas: 10613.66 s)
|
||||
Testowanie ZZ2 z C=10.0...
|
||||
Dokładność kwantowego SVM z ZZ2, C=10.0: 0.5817 (czas: 10607.32 s)
|
||||
Testowanie Pauli1 z C=0.1...
|
||||
Dokładność kwantowego SVM z Pauli1, C=0.1: 0.4183 (czas: 6271.53 s)
|
||||
Testowanie Pauli1 z C=1.0...
|
||||
Dokładność kwantowego SVM z Pauli1, C=1.0: 0.6100 (czas: 6273.75 s)
|
||||
Testowanie Pauli1 z C=10.0...
|
||||
Dokładność kwantowego SVM z Pauli1, C=10.0: 0.6350 (czas: 6273.05 s)
|
||||
Testowanie Pauli2 z C=0.1...
|
||||
Dokładność kwantowego SVM z Pauli2, C=0.1: 0.4183 (czas: 10614.06 s)
|
||||
Testowanie Pauli2 z C=1.0...
|
||||
Dokładność kwantowego SVM z Pauli2, C=1.0: 0.5450 (czas: 10918.57 s)
|
||||
Testowanie Pauli2 z C=10.0...
|
||||
Dokładność kwantowego SVM z Pauli2, C=10.0: 0.5717 (czas: 10893.87 s)
|
||||
Testowanie Amplitude_l2 z C=0.1...
|
||||
Używanie kodowania amplitudowego z normalizacją l2...
|
||||
Dokładność kwantowego SVM z Amplitude_l2, C=0.1: 0.7433 (czas: 4.19 s)
|
||||
Testowanie Amplitude_l2 z C=1.0...
|
||||
Używanie kodowania amplitudowego z normalizacją l2...
|
||||
Dokładność kwantowego SVM z Amplitude_l2, C=1.0: 0.8783 (czas: 4.19 s)
|
||||
Testowanie Amplitude_l2 z C=10.0...
|
||||
Używanie kodowania amplitudowego z normalizacją l2...
|
||||
Dokładność kwantowego SVM z Amplitude_l2, C=10.0: 0.8800 (czas: 4.18 s)
|
||||
Testowanie Amplitude_l1 z C=0.1...
|
||||
Używanie kodowania amplitudowego z normalizacją l1...
|
||||
Dokładność kwantowego SVM z Amplitude_l1, C=0.1: 0.4183 (czas: 4.19 s)
|
||||
Testowanie Amplitude_l1 z C=1.0...
|
||||
Używanie kodowania amplitudowego z normalizacją l1...
|
||||
Dokładność kwantowego SVM z Amplitude_l1, C=1.0: 0.4550 (czas: 4.19 s)
|
||||
Testowanie Amplitude_l1 z C=10.0...
|
||||
Używanie kodowania amplitudowego z normalizacją l1...
|
||||
Dokładność kwantowego SVM z Amplitude_l1, C=10.0: 0.8533 (czas: 4.22 s)
|
||||
Testowanie Amplitude_min-max z C=0.1...
|
||||
Używanie kodowania amplitudowego z normalizacją min-max...
|
||||
Dokładność kwantowego SVM z Amplitude_min-max, C=0.1: 0.8667 (czas: 4.29 s)
|
||||
Testowanie Amplitude_min-max z C=1.0...
|
||||
Używanie kodowania amplitudowego z normalizacją min-max...
|
||||
Dokładność kwantowego SVM z Amplitude_min-max, C=1.0: 0.9367 (czas: 4.30 s)
|
||||
Testowanie Amplitude_min-max z C=10.0...
|
||||
Używanie kodowania amplitudowego z normalizacją min-max...
|
||||
Dokładność kwantowego SVM z Amplitude_min-max, C=10.0: 0.9450 (czas: 4.30 s)
|
||||
Najlepszy kwantowy SVM: Amplitude_min-max z C=10.0, dokładność: 0.9450
|
||||
Ewaluacja najlepszego modelu z kodowaniem amplitudowym (normalizacja: min-max)...
|
||||
Raport klasyfikacji (najlepszy kwantowy SVM z kodowaniem amplitudowym, normalizacja: min-max):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.84 0.84 0.84 19
|
||||
Astrocytoma, anaplastic 0.97 0.93 0.95 42
|
||||
Glioblastoma 0.97 0.98 0.98 109
|
||||
Mixed glioma 0.97 1.00 0.99 38
|
||||
Oligodendroglioma, NOS 1.00 1.00 1.00 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.97 258
|
||||
macro avg 0.96 0.96 0.96 258
|
||||
weighted avg 0.97 0.97 0.97 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Kwantowy SVM z kodowaniem amplitudowym (min-max):
|
||||
Accuracy: 0.9690
|
||||
Precision: 0.9690
|
||||
Recall: 0.9690
|
||||
F1 Score: 0.9689
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 16 1 2 0 0 0]
|
||||
[ 2 39 1 0 0 0]
|
||||
[ 1 0 107 1 0 0]
|
||||
[ 0 0 0 38 0 0]
|
||||
[ 0 0 0 0 33 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
|
||||
Całkowity czas dla kwantowego SVM: 101896.78 sekund
|
||||
|
||||
======= PODEJŚCIE HYBRYDOWE =======
|
||||
Używanie mniejszego zbioru danych dla ewaluacji: (240, 8)
|
||||
Tworzenie problemu QUBO dla optymalizacji hiperparametrów...
|
||||
Używanie 7 map cech w podejściu hybrydowym: ['ZZ1', 'ZZ2', 'Pauli1', 'Pauli2', 'Amplitude_l2', 'Amplitude_l1', 'Amplitude_min-max']
|
||||
Używanie wcześniej obliczonego wyniku dla ZZ1, C=0.1: 0.4183
|
||||
Używanie wcześniej obliczonego wyniku dla ZZ1, C=1.0: 0.6117
|
||||
Używanie wcześniej obliczonego wyniku dla ZZ1, C=10.0: 0.6317
|
||||
Używanie wcześniej obliczonego wyniku dla ZZ2, C=0.1: 0.4183
|
||||
Używanie wcześniej obliczonego wyniku dla ZZ2, C=1.0: 0.5467
|
||||
Używanie wcześniej obliczonego wyniku dla ZZ2, C=10.0: 0.5817
|
||||
Używanie wcześniej obliczonego wyniku dla Pauli1, C=0.1: 0.4183
|
||||
Używanie wcześniej obliczonego wyniku dla Pauli1, C=1.0: 0.6100
|
||||
Używanie wcześniej obliczonego wyniku dla Pauli1, C=10.0: 0.6350
|
||||
Używanie wcześniej obliczonego wyniku dla Pauli2, C=0.1: 0.4183
|
||||
Używanie wcześniej obliczonego wyniku dla Pauli2, C=1.0: 0.5450
|
||||
Używanie wcześniej obliczonego wyniku dla Pauli2, C=10.0: 0.5717
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_l2, C=0.1: 0.7433
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_l2, C=1.0: 0.8783
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_l2, C=10.0: 0.8800
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_l1, C=0.1: 0.4183
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_l1, C=1.0: 0.4550
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_l1, C=10.0: 0.8533
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_min-max, C=0.1: 0.8667
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_min-max, C=1.0: 0.9367
|
||||
Używanie wcześniej obliczonego wyniku dla Amplitude_min-max, C=10.0: 0.9450
|
||||
Czas tworzenia problemu QUBO: 0.00 sekund
|
||||
Rozwiązywanie problemu QUBO za pomocą wyżarzania kwantowego...
|
||||
Czas wyżarzania kwantowego: 0.09 sekund
|
||||
Optymalne hiperparametry z wyżarzania kwantowego: feature_map=Amplitude_min-max, C=10.0
|
||||
Trenowanie modelu hybrydowego z kodowaniem amplitudowym (normalizacja: min-max)...
|
||||
Czas trenowania modelu hybrydowego: 2.13 sekund
|
||||
Czas ewaluacji modelu hybrydowego: 0.91 sekund
|
||||
Dokładność ostatecznego modelu hybrydowego: 0.9690
|
||||
Raport klasyfikacji (model hybrydowy):
|
||||
precision recall f1-score support
|
||||
|
||||
Astrocytoma, NOS 0.84 0.84 0.84 19
|
||||
Astrocytoma, anaplastic 0.97 0.93 0.95 42
|
||||
Glioblastoma 0.97 0.98 0.98 109
|
||||
Mixed glioma 0.97 1.00 0.99 38
|
||||
Oligodendroglioma, NOS 1.00 1.00 1.00 33
|
||||
Oligodendroglioma, anaplastic 1.00 1.00 1.00 17
|
||||
|
||||
accuracy 0.97 258
|
||||
macro avg 0.96 0.96 0.96 258
|
||||
weighted avg 0.97 0.97 0.97 258
|
||||
|
||||
|
||||
Szczegółowe metryki dla modelu Model hybrydowy:
|
||||
Accuracy: 0.9690
|
||||
Precision: 0.9690
|
||||
Recall: 0.9690
|
||||
F1 Score: 0.9689
|
||||
ROC AUC: N/A
|
||||
|
||||
Macierz pomyłek:
|
||||
[[ 16 1 2 0 0 0]
|
||||
[ 2 39 1 0 0 0]
|
||||
[ 1 0 107 1 0 0]
|
||||
[ 0 0 0 38 0 0]
|
||||
[ 0 0 0 0 33 0]
|
||||
[ 0 0 0 0 0 17]]
|
||||
|
||||
Całkowity czas dla podejścia hybrydowego: 3.17 sekund
|
||||
|
||||
======= PORÓWNANIE WYNIKÓW =======
|
||||
Klasyczny SVM: 0.9883720930232558
|
||||
Kwantowy SVM (bez wyżarzania): 0.9450
|
||||
Model hybrydowy: 0.9690
|
||||
|
||||
======= PORÓWNANIE CZASÓW WYKONANIA =======
|
||||
Czas przygotowania danych: 1.36 sekund
|
||||
Czas klasycznego SVM: 1.48 sekund
|
||||
Czas kwantowego SVM: 101896.78 sekund
|
||||
Czas podejścia hybrydowego: 3.17 sekund
|
||||
|
||||
======= ANALIZA ZNACZENIA CECH =======
|
||||
Wytrenowanie modelu na oryginalnych danych do analizy znaczenia cech...
|
||||
Najważniejsze cechy dla klasyfikacji:
|
||||
Primary_Diagnosis_Astrocytoma, anaplastic: 0.1531
|
||||
Primary_Diagnosis_Oligodendroglioma, NOS: 0.1353
|
||||
Primary_Diagnosis_Mixed glioma: 0.1314
|
||||
Primary_Diagnosis_Oligodendroglioma, anaplastic: 0.0663
|
||||
Primary_Diagnosis_Glioblastoma: 0.0531
|
||||
|
||||
Czas analizy znaczenia cech: 536.52 sekund
|
||||
|
||||
======= KLUCZOWE MUTACJE ZWIĄZANE Z KLASYFIKACJĄ NOWOTWORÓW =======
|
||||
Kluczowe mutacje:
|
||||
Primary_Diagnosis_Astrocytoma, anaplastic: 0.1531
|
||||
Primary_Diagnosis_Oligodendroglioma, NOS: 0.1353
|
||||
Primary_Diagnosis_Mixed glioma: 0.1314
|
||||
Primary_Diagnosis_Oligodendroglioma, anaplastic: 0.0663
|
||||
Primary_Diagnosis_Glioblastoma: 0.0531
|
||||
|
||||
======= PODSUMOWANIE EKSPERYMENTU =======
|
||||
Data i czas zakończenia: 2025-08-20 15:18:34
|
||||
Całkowity czas eksperymentu: 102446.16 sekund (1707.44 minut)
|
||||
|
||||
======= PODSUMOWANIE METRYK =======
|
||||
Klasyczny SVM:
|
||||
accuracy: 0.9883720930232558
|
||||
precision: 0.9882272335760708
|
||||
recall: 0.9883720930232558
|
||||
f1: 0.9882415068780154
|
||||
roc_auc: N/A
|
||||
|
||||
Kwantowy SVM:
|
||||
accuracy: 0.9689922480620154
|
||||
precision: 0.9690035416779602
|
||||
recall: 0.9689922480620154
|
||||
f1: 0.9688725912550494
|
||||
roc_auc: N/A
|
||||
|
||||
Model hybrydowy:
|
||||
accuracy: 0.9689922480620154
|
||||
precision: 0.9690035416779602
|
||||
recall: 0.9689922480620154
|
||||
f1: 0.9688725912550494
|
||||
roc_auc: N/A
|
||||
Loading…
Reference in New Issue